Welcome to HNCcorr’s documentation!

This implementation of the HNCcorr algorithm identifies cell bodies in two-photon calcium imaging movies. HNCcorr is described in detail in our arXiv paper.

The code consists of modular components that is configureable to your liking.

If you use HNCcorr for academic purposes, please cite the following paper:

Q Spaen, R Asín-Achá, and DS Hochbaum. (2017). HNCcorr: A novel combinatorial approach for cell identification in calcium-imaging movies. arXiv:1703.01999.

Contents:

• Welcome to HNCcorr’s documentation!
• Quickstart
  • Movies
  • Configuration
  • Cell identification
• API Documentation
  • Submodules
    • hnccorr.base module
    • hnccorr.graph module
    • hnccorr.movie module
    • hnccorr.postprocessor module
    • hnccorr.seeds module
    • hnccorr.segmentation module
    • hnccorr.utils module
  • Module contents

Indices and tables

• Module Index

• Search Page