HNCcorr
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Welcome to HNCcorr’s documentation!
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API Documentation
HNCcorr
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A
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B
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C
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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T
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__add__() (hnccorr.base.HNCcorrConfig method)
__eq__() (hnccorr.base.Candidate method)
(hnccorr.segmentation.Segmentation method)
__getitem__() (hnccorr.movie.Movie method)
(hnccorr.movie.Patch method)
__init__() (hnccorr.base.Candidate method)
(hnccorr.base.HNCcorr method)
(hnccorr.base.HNCcorrConfig method)
(hnccorr.graph.CorrelationEmbedding method)
(hnccorr.graph.GraphConstructor method)
(hnccorr.graph.SparseComputationEmbeddingWrapper method)
(hnccorr.movie.Patch method)
(hnccorr.movie.Subsampler method)
(hnccorr.postprocessor.SizePostprocessor method)
(hnccorr.seeds.LocalCorrelationSeeder method)
(hnccorr.segmentation.HncParametricWrapper method)
(hnccorr.segmentation.Segmentation method)
_compute_average_local_correlation() (hnccorr.seeds.LocalCorrelationSeeder method)
_compute_coordinate_offset() (hnccorr.movie.Patch method)
_construct_segmentations() (hnccorr.segmentation.HncParametricWrapper static method)
_filter() (hnccorr.postprocessor.SizePostprocessor method)
_get_tiff_images_and_size() (hnccorr.movie.Movie static method)
_movie_indices() (hnccorr.movie.Patch method)
_read_images() (hnccorr.movie.Movie static method)
_select_best_per_grid_block() (hnccorr.seeds.LocalCorrelationSeeder method)
A
add_frame() (hnccorr.movie.Subsampler method)
add_offset_set_coordinates() (in module hnccorr.utils)
add_offset_to_coordinate() (in module hnccorr.utils)
add_time_index() (in module hnccorr.utils)
advance_buffer() (hnccorr.movie.Subsampler method)
B
buffer() (hnccorr.movie.Subsampler property)
buffer_full() (hnccorr.movie.Subsampler property)
buffer_indices() (hnccorr.movie.Subsampler property)
C
Candidate (class in hnccorr.base)
clean() (hnccorr.segmentation.Segmentation method)
construct() (hnccorr.graph.GraphConstructor method)
CorrelationEmbedding (class in hnccorr.graph)
E
eight_neighborhood() (in module hnccorr.utils)
enumerate_pixels() (hnccorr.movie.Patch method)
exclude_pixels() (hnccorr.seeds.LocalCorrelationSeeder method)
exponential_distance_decay() (in module hnccorr.graph)
extract_valid_pixels() (hnccorr.movie.Movie method)
F
fill_holes() (hnccorr.segmentation.Segmentation method)
four_neighborhood() (in module hnccorr.utils)
from_config() (hnccorr.base.HNCcorr class method)
from_tiff_images() (hnccorr.movie.Movie class method)
G
generate_pixels() (in module hnccorr.utils)
get_vector() (hnccorr.graph.CorrelationEmbedding method)
GraphConstructor (class in hnccorr.graph)
H
HNCcorr (class in hnccorr.base)
hnccorr.base (module)
hnccorr.graph (module)
hnccorr.movie (module)
hnccorr.postprocessor (module)
hnccorr.seeds (module)
hnccorr.segmentation (module)
hnccorr.utils (module)
HNCcorrConfig (class in hnccorr.base)
HncParametricWrapper (class in hnccorr.segmentation)
I
is_valid_pixel_coordinate() (hnccorr.movie.Movie method)
L
list_images() (in module hnccorr.utils)
LocalCorrelationSeeder (class in hnccorr.seeds)
M
Movie (class in hnccorr.movie)
N
NegativeSeedSelector (class in hnccorr.seeds)
next() (hnccorr.seeds.LocalCorrelationSeeder method)
num_dimensions() (hnccorr.movie.Movie property)
num_frames() (hnccorr.movie.Movie property)
(hnccorr.movie.Patch property)
num_pixels() (hnccorr.movie.Movie property)
O
output_shape() (hnccorr.movie.Subsampler property)
P
Patch (class in hnccorr.movie)
pixel_shape() (hnccorr.movie.Movie property)
(hnccorr.movie.Patch property)
PositiveSeedSelector (class in hnccorr.seeds)
R
reset() (hnccorr.seeds.LocalCorrelationSeeder method)
S
segment() (hnccorr.base.Candidate method)
(hnccorr.base.HNCcorr method)
Segmentation (class in hnccorr.segmentation)
segmentations_to_list() (hnccorr.base.HNCcorr method)
select() (hnccorr.postprocessor.SizePostprocessor method)
(hnccorr.seeds.NegativeSeedSelector method)
(hnccorr.seeds.PositiveSeedSelector method)
select_edges() (hnccorr.graph.SparseComputationEmbeddingWrapper method)
select_max_seed_component() (hnccorr.segmentation.Segmentation method)
select_seeds() (hnccorr.seeds.LocalCorrelationSeeder method)
SizePostprocessor (class in hnccorr.postprocessor)
solve() (hnccorr.segmentation.HncParametricWrapper method)
SparseComputationEmbeddingWrapper (class in hnccorr.graph)
Subsampler (class in hnccorr.movie)
T
to_movie_coordinate() (hnccorr.movie.Patch method)
to_patch_coordinate() (hnccorr.movie.Patch method)
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